species:   Rhsol
pid:       PID0464
parent:    Rhi-milR-29
paralog:   
locus:     KB317696.1:3612199-3612272
matures:   ['AGGAGUCAUUGUUGCAGGCAGA', 'UGUCGACGGCGGGCUCCGCA']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317696.1:3612199-3612272

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

   ********************************      *************************        
UUGUGCUAUAAGGAGUCAUUGUUGCAGGCAGAUUUCAUGUACAUACUGUCGACGGCGGGCUCCGCAGAACAUUA
((.(((.....((((((..(((((..(((((..............)))))..)))))))))))))).)).....
----------AGGAGUCAUUGUUGCAGGCAGA------------------------------------------ l=22 a=0 c
----------------------------------------------UGUCGACGGCGGGCUCCGCA-------- l=20 a=0 c*
-------------------------------------------UACUGUCGACGGCGGGCUCCGCA-------- l=23 a=1 ma
-----CUAUAAGGAGUCAUUGUUGCAGGCAGAUUU--------------------------------------- l=30 a=0 ma*

--------------------------------------------ACUGUCGACGGCGGGCUCCG---------- l=20 a=1 
-------------------------------------------UACUGUCGACGGCGGGCUCCGCA-------- l=23 a=1 (ma)
---------AAGGAGUCAUUGUUGCAGGCAGAUUUC-------------------------------------- l=27 a=1 

mb-01010
ax-1001011
ku-01
ss-100111101000
fn-011
